Hey there,
What version are you having this issue with?
The settings have changed in many ways in 4.1.x, please wait for support to get back
You are free to read the changes here
If the main pedal is set to react on the press, the BeatBuddy cannot be set to have a hold behavior and so cannot be set to stop with a hold when using the main pedal, you must set it to tap to stop in the Paused settings.
We split the While Playing and While Paused settings for more versatility as well
Simply go to the settings and configure as makes most sense to you with the new settings available.
If you set an Ext Footswitch to play the outro while paused and set the External Unpause (Main Pedal> Unpause behavior > External Unpause) setting to Stop Song, the footswitch can be used to stop the song immediately with one tap while paused.
We apologize if these changes caused issues for you but it is always good to do research on an update before updating and playing with it live
Thanks for the report